1.) What do I do with the cold start injector?
2.) What do I do about the air passages that bypass the throttle body's throttle plate?
3.) What do I do about the line that goes from the intake manifold to the pcv valve into the crank case?
4.) When I hook up the MAP sensor line, is that the ONLY thing I need to leave intact on the intake plenum is a nipple for the line to hook up to it? Should I weld all other holes/passages shut except for the nipple for the MAP sensor line to attach to?
5.) How do I initially set up the timing for this unit? what I mean is at what position should the crankshaft be at when the 'missing tooth' crosses over the hal effect sensor that goes into the MJLJ?
6.) Is the timing of the entire system based on TDC relative to this 'missing tooth' passing over the hall effect sensor? Meaning, using the software am I able to tell the unit that when the 'missing tooth' passes over the sensor, the current crank position will be at 56 degrees btdc? Or do I have to set the basic setting?
Thanks and sorry for the long post, but these are my only remaining concerns before I order my MJLJ and get to soldering

-Michael